FastQCFastQC Report
Wed 22 Feb 2023
EGAF00007699858

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007699858
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences92431901
Sequences flagged as poor quality0
Sequence length76
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2037150.2203946881932029No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACAGCGATAGATCTCGTATG1998420.21620457638321214TruSeq Adapter, Index 1 (97% over 35bp)
CTCGGATCGGCCCCGCCGGGGTCGGCCCACGGCCCTGGCGGAGCGCTGAG1610290.17421366244539319No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGCGATAGATCTCGTAT1411890.15274921155197274TruSeq Adapter, Index 1 (97% over 36bp)
GGCGTACGGAAGACCCGCTCCCCGGCGCCGCTCGTGGGGGGCCCAAGTCC1163990.1259294667108491No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)