FastQCFastQC Report
Wed 22 Feb 2023
EGAF00007699876

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007699876
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences81099459
Sequences flagged as poor quality0
Sequence length76
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGTACGGAAGACCCGCTCCCCGGCGCCGCTCGTGGGGGGCCCAAGTCC1632050.20124055328161933No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCGGCTATGATCTCGTATG1396840.17223789372010484TruSeq Adapter, Index 7 (97% over 35bp)
CTCGGATCGGCCCCGCCGGGGTCGGCCCACGGCCCTGGCGGAGCGCTGAG1112010.1371168209642434No Hit
GTACGGAAGACCCGCTCCCCGGCGCCGCTCGTGGGGGGCCCAAGTCCTTC1036990.1278664509956842No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)