FastQCFastQC Report
Wed 22 Feb 2023
EGAF00007699990

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007699990
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences99535294
Sequences flagged as poor quality0
Sequence length76
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGCGAAATCTCGTATG4761190.47834188343282535TruSeq Adapter, Index 6 (97% over 35bp)
GGCGTACGGAAGACCCGCTCCCCGGCGCCGCTCGTGGGGGGCCCAAGTCC1329270.13354760372737734No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGCGAAATCTCGTAT1191830.11973943634506169TruSeq Adapter, Index 6 (97% over 36bp)
GTACGGAAGACCCGCTCCCCGGCGCCGCTCGTGGGGGGCCCAAGTCCTTC1126240.11314981397452847No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)