FastQCFastQC Report
Wed 15 May 2024
EGAF00007700000

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007700000
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences97219496
Total Bases7.3 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACATTCAGAAATCTCGTATG1794090.18454014614517236TruSeq Adapter, Index 13 (97% over 37bp)
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT1166350.11997079268956506No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)