FastQCFastQC Report
Wed 22 Feb 2023
EGAF00007700042

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007700042
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences87216007
Sequences flagged as poor quality0
Sequence length76
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGGAGAATCTCGTATG1679030.19251397280776683TruSeq Adapter, Index 6 (97% over 35bp)
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT878820.10076361326654176No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)