FastQCFastQC Report
Wed 22 Feb 2023
EGAF00007700052

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007700052
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences113004783
Sequences flagged as poor quality0
Sequence length76
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCTGAAGCTATCTCGTATG1868100.16531158685557584TruSeq Adapter, Index 19 (97% over 37bp)
GGGAGTTTGACTGGGGCGGTACACCTGTCAAACGGTAACGCAGGTGTCCT1761810.15590579028854026No Hit
CTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCACCAAGCGTT1247570.11039975184059245No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT1141520.10101519331265829No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)