FastQCFastQC Report
Wed 22 Feb 2023
EGAF00007700220

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007700220
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences99220480
Sequences flagged as poor quality0
Sequence length76
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCGCTCATTATCTCGTATG4436440.4471294635946127TruSeq Adapter, Index 2 (97% over 36bp)
GGCGTACGGAAGACCCGCTCCCCGGCGCCGCTCGTGGGGGGCCCAAGTCC1092400.11009823778316734No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)