FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007703009

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007703009
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66558
Sequences flagged as poor quality0
Sequence length244-251
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGTTCGCTACCCTAGCTTTCGAGCCTCAGCGTCAGTTACAGTCCAGAA1470922.09952222122059No Hit
CCTGTTTGATCCCCACGCTTTCGTGCTTCAGTGTCAGTTATAGTTTAGTA839912.619069082604645No Hit
CCTGTTTGCTACCCATGCTTTCGAGCCTCAGCGTCAGTTGGTGCCCAGTA60519.091318849725052No Hit
CCTGTTTGATACCCACACTTTCGAGCATCAGCGTCAGTTACAATCCAGTA39315.906126986988792No Hit
CCTGTTTGCTCCCCACGCTTTCGCACCTGAGCGTCAGTCTTTGTCCAGGG24533.68550737702455No Hit
CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTG15792.3723669581417712No Hit
CCTGTTTGCTCCCCACGCTTTCGCACCTGAGCGTCAGTCTTCGTCCAGGG15002.2536734877850897No Hit
CCTGTTTGCTCCCCACGCTTTCGTGCATGAGCGTCAGTCGCATCCCAGGG8071.2124763364283782No Hit
CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTATCGTCCAGTA7811.1734126626401034No Hit
CCCGTTCGCTACCCTCGCTTTCGAGCCTCAGCGTCAGTTACAGTCCAGAA6230.9360257219267407No Hit
CCTGTTTGATACCCACACTTTCGAGCATCAGCGTCAGTTACAGTCCAGTA5470.8218395985456295No Hit
CCTGTTTGATACCCACACTTTCGAGCATCAGCGTCAGTTACAGTCCAGCA5350.8038102106433487No Hit
CCTGTTTGCTACCCACGCTTTCGCACCTCAGCGTCAGTTACCGTCCAGGT4750.713663271131945No Hit
CCTGTTTGATCCCCACGCTTTCGTGCTTCAGCGTCAGTTATAGTTTAGTA3480.5228522491661408No Hit
CCTGTTTGATCCCCACGCTTTCGTGCATCAGCGTCAGTCATGGCTTGGCA3180.477778779410439No Hit
CCCGTTCGCTCCCCTGGCTTTCGCGCCTCAGCGTCAGTTTTCGTCCAGAA3000.4507346975570179No Hit
CCTGTTTGATACCCACACTTTCGAGCCTCAGCGTCAGTTACAATCCAGTA2430.36509510502118453No Hit
CCTGTTTGCTACCCATGCTTTCGAGCCTCAGCGTCAGTTGGTGCTCAGTA2080.31250939030619906No Hit
CCTGTTTGCTACCCACACTTTCGAGCCTCAGCGTCAGTTGGTGCCCAGTA2050.30800204333062897No Hit
CCTGTTTGATCCCCACGCTTTCGCGCTTCAGTGTCAGTTATAGTTTAGTA1940.2914751044202049No Hit
CCTGTTCGCTCCCCCAGCTTTCGCGCCTCAGCGTCAGTTTCGGCCCAGAG1730.25992367559121365No Hit
CCCGTTCGCTACCCTAGCTTTCGAGCCTCAGCGTCAGTTACAGTCCAGCA1580.23738694071336278No Hit
CCTGTTTGATACCCGCACTTTCGAGCCTCAGCGTCAGTGCTGCCCCGGCA1570.23588449172150605No Hit
CCCGTTCGCTACCCTAGCTTTCGATCCTCAGCGTCAGTTACAGTCCAGAA1460.21935755281108207No Hit
CCCGTTCGCTACCCTAGCTTTCGCGCCTCAGCGTCAGTTACAGTCCAGAA1430.2148502058355119No Hit
CCCGTTCGCTACCCTGGCTTTCGCATCTCAGCGTCAGACACAGTCCAGAA1370.20583551188437152No Hit
CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCTAGTG1340.20132816490880134No Hit
CCTATTTGCTCCCCACGCTTTCGGGACTGAGCGTCAGTTGCAGGCCAGAT1330.19982571591694462No Hit
CCCGTTCGCTACCCTAGCTCTCGAGCCTCAGCGTCAGTTACAGTCCAGAA1290.19381591994951772No Hit
CCTGTTTGATCCCCACGCTTTCGTGCCTCAGTGTCAGTTATAGTTTAGTA1220.18329877700652064No Hit
CCTGTTTGATCCCCACGCTTTCGTGCTTCAGGGTCAGTTATAGTTTAGTA1160.17428408305538026No Hit
CCTGTTTGATCCCCACGCTCTCGTGCTTCAGTGTCAGTTATAGTTTAGTA1130.1697767360798101No Hit
CCTGTTCGATACCCACGCTTTCGAGCCTCAGCGTCAGTCGCGAGTTGGTA1110.16677183809609664No Hit
CCCGTTCGCTACCCTAGCTTGCGAGCCTCAGCGTCAGTTACAGTCCAGAA1000.15024489918567266No Hit
CCTGTTTGATACCCACACTTTCGCGCATCAGCGTCAGTTACAATCCAGTA970.14573755221010246No Hit
CCCGTTCGCTACCCTAGCTTTCGAGCCTCAGCGTCATTTACAGTCCAGAA950.142732654226389No Hit
CCTGTTTGATCCCCACGCTTGCGTGCTTCAGTGTCAGTTATAGTTTAGTA940.14123020523453228No Hit
CCTGTTTGATCCCCACGCTTTCGTGCTTCAGAGTCAGTTATAGTTTAGTA880.13221551128339193No Hit
CCCGTTCGCTACCCTAGCTTTCGAGCCTCAGCGTCAGTTACAGTCTAGAA810.12169836834039485No Hit
GCCGTTCGCTACCCTAGCTTTCGAGCCTCAGCGTCAGTTACAGTCCAGAA810.12169836834039485No Hit
CCTGTTTGATACCCACACTTTCGAGCCTCAGTGTCAGTTACCAGTCCAGT810.12169836834039485No Hit
CCTGTTTGCTACCCATGCTTTCGCGCCTCAGCGTCAGTTGGTGCCCAGTA730.10967877640554104No Hit
CCTGTTTGATACCCACACTTTCGAGCATCAGCGTCAGTTACAATCTAGTA720.10817632741368431No Hit
CCTGTTTGATCCCCACGCTTTCGTGCTTCAGTGTCAGTTATCGTTTAGTA720.10817632741368431No Hit
CCCGTTCGCTACCCTAGCTTTCGAGCCTCAGCGTCAGTTGGTGCCCAGTA710.10667387842182759No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)