FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007705793

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007705793
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41
Sequences flagged as poor quality0
Sequence length249-251
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGTTTGCTACCCACACTTTCGAGCCTCAGCGTCAGTTGGTGCCCAGTA37.317073170731707No Hit
CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGCGTCAGTTTTCGTCCAGAA37.317073170731707No Hit
CCTGTTTGATACCCACACTTTCGAGCCTCAATGTCAGTTGCAGCTTAGCA37.317073170731707No Hit
CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTG24.878048780487805No Hit
CCTGTTTGATACCCACACTTTCGAGCATCAGCGTCAGTTACAGTCCAGTA24.878048780487805No Hit
CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACCGTCCAGTA24.878048780487805No Hit
CCTGTTTGATACCCACACTTTCGAGCATCAGCGTCAGTTACAGTCCAGCA24.878048780487805No Hit
CCTATTTGCTCCCCACGCTTGCGCGACTGAGCGTCAGTTATGCGCCAGAT12.4390243902439024No Hit
CCTGGTTGCGGCCGACTCTCTCGAGACTCAGCGTTATTTATCGTTTAGTA12.4390243902439024No Hit
CCTGTTTGCTCCCCACGCTCTCGAGCCTCAACGTCAGTTACTGTCCAGTA12.4390243902439024No Hit
CCTGTTTGCTACCCACGCCTTCGCGCCTCAGCGTCAGTTACTGTCCAGCA12.4390243902439024No Hit
CCTGTTTGCTCCCCACGCTTTCGCACCTCAGCGTCAGTTTTCGTCCAGAA12.4390243902439024No Hit
CCTGTTCGCTCCCCTAGCTTTCGCGCCTCAGCGTCAGTAGCGGCCCAGAA12.4390243902439024No Hit
CCTGTTTGCTCCCCACGCTTTCGTGCATGAGCGTCAGTCGCATCCCAGGG12.4390243902439024No Hit
CCTGTTCGCTACCCACGCTTTGTAGACTCAGCGACAGTTATCGTCAAGTA12.4390243902439024No Hit
CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTGGTCGTCCAGTA12.4390243902439024No Hit
CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACCGTCTAGTA12.4390243902439024No Hit
CCTATTTGCTCCCCACGCTTTCGCGACTGAGCGTCAGTTATGCGCCAGAT12.4390243902439024No Hit
CCTATTTGCTCCCCACGCTTTCGGGACTGAGCGTCAGTTATGCGCCAGAT12.4390243902439024No Hit
CCTGTTCGCTCCCCTAGCTTTCGCGCCTCAGCGTCAGTGTCGGCCCAGAA12.4390243902439024No Hit
CCTGTTTGATACCCACACTTTCGATCATCAGCGTCAGTTACAGTCCAGTA12.4390243902439024No Hit
CCAGTTTGCGCCCCACGCTTTCGAGCCTCAGCGTCAGTGGTCGTCCAGTA12.4390243902439024No Hit
CCTGTTTGCTCCCCACGCTTTCGATCCTCAACGTCAGTTACTGTCCAGTA12.4390243902439024No Hit
CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTA12.4390243902439024No Hit
CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGCGTCCGTTACCGTCCAGTA12.4390243902439024No Hit
CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTTATCGTCCAGTA12.4390243902439024No Hit
CCTGTTTGATACCCACACTCTCGAGCATCAGCGTCAGTTACAGTCTAGCA12.4390243902439024No Hit
CCTGTTGGCTCCACCAGCTTTCGCTACTCAGCGTCGGTGACGCCCCAGAG12.4390243902439024No Hit
CCTGTTCGCTCCCCTAGCTTTCGCGCCTCAGCGTCAGTGGCGGCCCAGAA12.4390243902439024No Hit
CCTGTTTGATACCCACACTTTCGAGCCTCAGTGTCAGTTTCAGTCCAGTG12.4390243902439024No Hit
CCTGTTTGATACCCACACTTTCGAGCCTCAGCGTCAGTTACAGTCCAGCA12.4390243902439024No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)