FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007706251

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007706251
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44
Sequences flagged as poor quality0
Sequence length250-251
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGTTTGCTCCCCACGCTTTCGTGCCTCAGTGTCAGTAACAGTCCAGCA511.363636363636363No Hit
CCTGTTCGATACCCGCACTTTCGAGCTTCAGCGTCAGTTGCGCTCCAGTG49.090909090909092No Hit
CCTGTTTGATACCCACACTTTCGAGCCTCAATGTCAGTTGCAGCTTAGCA36.8181818181818175No Hit
CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACCGTCCAGTA36.8181818181818175No Hit
CCTGTTTGCTCCCCACGCTTTCGTGCATGAGCGTCAGTTGCGTCCCAGGG36.8181818181818175No Hit
CCTGTTTGATACCCACACTTTCGAGCATCAATGTCAGTTACAGGTTAGTA24.545454545454546No Hit
CCCGTTCGCTACCCTGGCTTTCGCATCTCAGCGTCAGACACAGTCCAGAA24.545454545454546No Hit
CCTGTTCGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTTACAGACCAGAG24.545454545454546No Hit
CCTGTTCGCTCCCCACGCTTTCGCTCCTCAGCGTCAGTGACGGCCCAGAG24.545454545454546No Hit
CCTGTTCGATACCCGCACTTTCGAGCTTCAGCGTCAGTTGCGCTCCCGTG24.545454545454546No Hit
CCTGTTTGCTACAGACACTTTCGAGACACACCGTTAGTATCCGCTCAGTT12.272727272727273No Hit
CCTGTTTGCTACCCACGCTTTCGAGCCTCAACGTCAGTTACCGTCCAGTA12.272727272727273No Hit
CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTCATCGTCCAGCA12.272727272727273No Hit
CCTGTTTGCTACCCACACTTGCGAGCCTCAGCGTCCGTTGGTGCTCAGTC12.272727272727273No Hit
CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTG12.272727272727273No Hit
CCTGTTCGATACCCGCACTTTCGCGCTTCAGCGTCAGTTGCGCTCCAGTG12.272727272727273No Hit
CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCTAGTG12.272727272727273No Hit
CCTATTTGCTCCCCACGCTTTCGTGCTTCAGTGACAGCAACAGACCAGAC12.272727272727273No Hit
CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGTGTCAGTTACAGTCCAGCA12.272727272727273No Hit
CCTGTTTGCTCCCCACGCTTTCGCGCATGAGCGTCAGTTGCGTCCCAGGG12.272727272727273No Hit
CCTGTTTGCTACCCACGCTCTCGAGCCTCAGCGTCAGTTGGTGCCCAGTA12.272727272727273No Hit
CCTGTTTGCTACCCATGCTTTCGAGCCTCAGCGTCAGTTGGTGCCCAGTA12.272727272727273No Hit
CCTGTTTGCTCCCCACGCTCTCGCGCCTCAACGTCAGTTACCGTCCAGTA12.272727272727273No Hit
CCTGTTTGATACCCACACTTACGAGCATCAGCGTCAGTTACAATCCAGTA12.272727272727273No Hit
CCTGTTTGCTGCCCATGCTTTCGAGCCTCAGCGTCAGTTGGTGCCCAGTA12.272727272727273No Hit
CCTGTTTGCTCCCCACGCTTTCGGGAATGAGCGTCAGTTGCGGCCCAGAC12.272727272727273No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)