FastQCFastQC Report
Wed 8 May 2024
EGAF00007709861

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007709861
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9509106
Total Bases960.4 Mbp
Sequences flagged as poor quality0
Sequence length101
%GC79

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTTTCTCTCCTCCCCCCTCCTCCCCCCTCCCCCCCCCCCCCCCCCCCCC465910.48996193753650447No Hit
TCTTTCTCTCCCCCCCCCTCCTCCCCCCTCCCCCCCCCCCCCCCCCCCCC323090.33976905925751594No Hit
TCTTTCTCTCCTCCCCCCTCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCC181170.19052264219160037No Hit
TCTTTCTCTCCTCCCCCCTCCTCCCCCCTCCCCCCCTCCCCCCCCCCCCC165490.17403318461272804No Hit
TCTTTCTCTCCTCCCCCCTCCTCCCCCCTCCCCCCTCCCCCCCCCCCCCC162850.17125689838771385No Hit
TCTTTCTCTCCTCCCCCCCCCTCCCCCCTCCCCCCCCCCCCCCCCCCCCC136520.14356764978747738No Hit
TCTTTCCCTCCCCCCCCCTCCTCCCCCCTCCCCCCCCCCCCCCCCCCCCC131990.13880379501500983No Hit
TCTTTCTCTCCCCCCCCCTCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCC120830.12706767597290428No Hit
TCTTTCCCTCCTCCCCCCTCCTCCCCCCTCCCCCCCCCCCCCCCCCCCCC105260.11069389698674093No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)