FastQCFastQC Report
Fri 16 Dec 2022
EGAF00007710656

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007710656
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483166416
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTTAAGAGAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT13416320.2776749284660546No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGAATTCGTATCTCGTATG12821080.26535536360623213TruSeq Adapter, Index 7 (97% over 34bp)
GGCTTAAGAGATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA7721430.15980891354005036No Hit
GGCTTAAGAGAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC5017320.10384248229703118No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)