FastQCFastQC Report
Fri 16 Dec 2022
EGAF00007710658

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007710658
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442275264
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTTAAGAGAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT11597510.26222379915870675No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGAATTCGTATCTCGTATG10095850.2282707359369752TruSeq Adapter, Index 7 (97% over 34bp)
GGCTTAAGAGATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA6537570.1478167677946375No Hit
GGCTTAAGAGAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC4610630.10424797349733762No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)