FastQCFastQC Report
Sun 5 May 2024
EGAF00007710662

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007710662
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences517544728
Total Bases78.1 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TACCTCCCAGGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT35264960.6813896092860983No Hit
TACCTCCCAGGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA22936010.443169619148357No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCAACGCATCTCGTATG14571270.28154610049471895TruSeq Adapter, Index 6 (97% over 37bp)
TACCTCCCAGGGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC9187290.17751683097040455No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)