FastQCFastQC Report
Sat 17 Dec 2022
EGAF00007710665

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007710665
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492673590
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTTGTGGTATGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT20113850.408259147806157No Hit
ATTTGTGGTATTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA17438590.3539582870679145No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTATCCACTGGTGTAGATCTC15787300.3204413697109277Illumina Single End PCR Primer 1 (96% over 32bp)
ATTTGTGGTATGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC6091180.12363520439567299No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)