FastQCFastQC Report
Fri 16 Dec 2022
EGAF00007710668

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007710668
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506107149
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTAGTCGATATGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT21695780.4286795798650139No Hit
GTAGTCGATATTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA15022980.29683398129592514No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACAACGTTCCATCTCGTATG5720680.11303298148037028TruSeq Adapter, Index 1 (97% over 35bp)
GTAGTCGATATGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC5401030.10671712523072856No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)