FastQCFastQC Report
Fri 16 Dec 2022
EGAF00007710672

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007710672
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468610609
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTAAGAATCAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT34049640.7266083896961026No Hit
TGTAAGAATCATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA25803320.5506345674730552No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGCAGAATTATCTCGTATG22969410.49015983758916565TruSeq Adapter, Index 5 (97% over 36bp)
TGTAAGAATCAGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC4916760.1049220804132499No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)