FastQCFastQC Report
Sat 17 Dec 2022
EGAF00007710675

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007710675
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences509984405
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTTGGCCGGTGTGTAGATCTC33767140.6621210309362303Illumina Single End PCR Primer 1 (96% over 33bp)
TGTAAGAATCAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT32901420.6451456098936986No Hit
TGTAAGAATCATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA27967510.5483993182105246No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)