FastQCFastQC Report
Fri 16 Dec 2022
EGAF00007710889

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007710889
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47858907
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGTCTTTAGTTTACTCAGCATCAGCTACTAACATACCTGAACGAAGAT1043990.21813912298498583No Hit
CGAAGATCTTGTTCTAAGACATTGTATGTGAAGATGATACCTGCAAAAGA671080.14022050273734835No Hit
TGAAAACAGATATTGTCAGAGTTCTGCTCTAGACAGTGTAGGGCAACAAT572520.1196266350169677No Hit
CTGAACTCGATGGAGAGAGTAGAATGGCTGCGTAAGAAGCTGCAGGATGT517810.10819511611495851No Hit
GGGAAATCTGTTAAGAAGAGATCTGTGAGTGAAATACAGCTTATGCATAA478970.10007959437937017No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)