FastQCFastQC Report
Fri 16 Dec 2022
EGAF00007710890

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007710890
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47871086
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGGATTTAGCTTTAGTTAATACATTCACATCAGCTTTGTCTGCCTCTC1188420.24825423847706315No Hit
CTCAAATGAATAAAAGTGGAATCAGAATAATCAATTAAAATTGCAGTTAT1021230.21332918998328135No Hit
GTGGAATCAGAATAATCAATTAAAATTGCAGTTATCATGGCTAGTGATGG817230.1707147399998404No Hit
CCCAGGTTATGCATAAGCTGTATTTCACTCACAGATCTCTTCTTAACAGA804720.16810147152291469No Hit
CTTTTTTCTGGGCCTCTGGGAACCAGCATCTCTGGGAGCTAGAGGAGCTC542160.11325416766187422No Hit
CTTTTTTCGGGGCCTCTGGGAACCAGCATCTCTGGGAGCTAGAGGAGCTC484200.10114665040187305No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)