FastQCFastQC Report
Tue 21 Feb 2023
EGAF00007772763

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007772763
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4266130
Sequences flagged as poor quality0
Sequence length10
%GC49

[WARN]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGTAGATCT458851.0755649734068113Illumina Single End PCR Primer 1 (100% over 10bp)
GGGGGGGGGG174430.4088717408986599No Hit
GTGTTGATCT109150.2558524939465042No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)