FastQCFastQC Report
Tue 7 May 2024
EGAF00007773641

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007773641
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences384415559
Total Bases57.1 Gbp
Sequences flagged as poor quality0
Sequence length35-150
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN22220070.5780221294320712No Hit
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC5131330.13348393112256937No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)