FastQCFastQC Report
Thu 23 Feb 2023
EGAF00007773706

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007773706
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439694560
Sequences flagged as poor quality0
Sequence length35-150
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN19483450.44311328300263714No Hit
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC5111970.11626184322134892No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)