FastQCFastQC Report
Fri 31 Mar 2023
EGAF00007808335

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007808335
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11768795
Sequences flagged as poor quality0
Sequence length101
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT4564663.8786128911243676Clontech SMART CDS Primer II A (100% over 26bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA408100.34676447333817945No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)