FastQCFastQC Report
Wed 8 May 2024
EGAF00007808357

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007808357
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9236665
Total Bases932.9 Mbp
Sequences flagged as poor quality0
Sequence length101
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT4021694.354049865400554Clontech SMART CDS Primer II A (100% over 26bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA288750.3126128315793633No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)