FastQCFastQC Report
Mon 6 May 2024
EGAF00007808401

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007808401
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16783210
Total Bases1.6 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT6568833.9139294568798224Clontech SMART CDS Primer II A (100% over 26bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1511100.9003641138971628No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)