FastQCFastQC Report
Fri 31 Mar 2023
EGAF00007808655

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007808655
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11961868
Sequences flagged as poor quality0
Sequence length101
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT9881128.260515832477001Clontech SMART CDS Primer II A (100% over 26bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA324100.2709443040167305No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)