FastQCFastQC Report
Wed 4 Jan 2023
EGAF00007813357

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007813357
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4286252
Sequences flagged as poor quality0
Sequence length35-76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATGCCGT859152.0044318439513122TruSeq Adapter, Index 1 (100% over 50bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATGC388330.905989661830429TruSeq Adapter, Index 1 (100% over 50bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG90610.21139681008022862No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)