FastQCFastQC Report
Wed 4 Jan 2023
EGAF00007813359

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007813359
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4183990
Sequences flagged as poor quality0
Sequence length35-76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATGCCGT833531.9921892738749374TruSeq Adapter, Index 1 (100% over 50bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATGC374710.8955805343703019TruSeq Adapter, Index 1 (100% over 50bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG88550.21164008518184796No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)