FastQCFastQC Report
Wed 4 Jan 2023
EGAF00007813483

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007813483
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1836290
Sequences flagged as poor quality0
Sequence length35-76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATGC68140.3710742856520484TruSeq Adapter, Index 2 (100% over 50bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45210.24620294180113161No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)