FastQCFastQC Report
Wed 4 Jan 2023
EGAF00007813537

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007813537
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6047338
Sequences flagged as poor quality0
Sequence length35-76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG112330.1857511519944809No Hit
GTCAGTATCAGGCTGCGGCTTCAAAGCCGAAGTGGTGGTTGGATGTGAAGTGGAATTTTAGTTGTCGTAGTAAGC88840.14690761455701665No Hit
GCTTATTTTAGGTTGATATATGTTGGTTCTTCAAATGTGTGATAGGGAGG62570.10346701308906497No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)