FastQCFastQC Report
Wed 4 Jan 2023
EGAF00007813705

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007813705
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4088340
Sequences flagged as poor quality0
Sequence length35-76
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG61590.15064794023980393No Hit
GCTCAATCTCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCTCGGGGGTCGCGTA55740.13633895419656877No Hit
GTTCGATTAGTCTTTCGCCCCTATACCCAGGTCGGACGACCGATTTGCACGTCAGGACCGCTACGGACCTCCACC49610.1213450936076745No Hit
CCGGGGCTCCCGCCGGCTTCTCCGGGATCGGTTGCGTTACCGCACTGGAC45860.11217266665688275No Hit
GCCCCATTGGCTCCTCAGCCAAGCACATACACCAAATGTCTGAACCTGCG45670.11170793035804262No Hit
CCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCCAAAGGTCAGAA44140.1079655801621196No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)