FastQCFastQC Report
Wed 4 Jan 2023
EGAF00007813707

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007813707
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4039150
Sequences flagged as poor quality0
Sequence length35-76
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG69330.1716450243244247No Hit
GCTCAATCTCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCTCGGGGGTCGCGTA54660.1353255016525754No Hit
GTTCGATTAGTCTTTCGCCCCTATACCCAGGTCGGACGACCGATTTGCACGTCAGGACCGCTACGGACCTCCACC50000.12378842083111546No Hit
GCCCCATTGGCTCCTCAGCCAAGCACATACACCAAATGTCTGAACCTGCG46160.1142814701112858No Hit
CCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCCAAAGGTCAGAA45130.1117314286421648No Hit
CCGGGGCTCCCGCCGGCTTCTCCGGGATCGGTTGCGTTACCGCACTGGAC43600.10794350296473268No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)