FastQCFastQC Report
Wed 4 Jan 2023
EGAF00007813709

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007813709
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4192579
Sequences flagged as poor quality0
Sequence length35-76
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG70760.16877439876505607No Hit
GCTCAATCTCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCTCGGGGGTCGCGTA57060.1360976143800749No Hit
GTTCGATTAGTCTTTCGCCCCTATACCCAGGTCGGACGACCGATTTGCACGTCAGGACCGCTACGGACCTCCACC51130.12195357559153924No Hit
GCCCCATTGGCTCCTCAGCCAAGCACATACACCAAATGTCTGAACCTGCG47890.11422563534282837No Hit
CCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCCAAAGGTCAGAA46920.11191202360170197No Hit
CCGGGGCTCCCGCCGGCTTCTCCGGGATCGGTTGCGTTACCGCACTGGAC46280.11038551688590723No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)