FastQCFastQC Report
Wed 4 Jan 2023
EGAF00007813711

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007813711
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4089685
Sequences flagged as poor quality0
Sequence length35-76
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG62260.1522366637039283No Hit
GCTCAATCTCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCTCGGGGGTCGCGTA55810.13646527788815033No Hit
GTTCGATTAGTCTTTCGCCCCTATACCCAGGTCGGACGACCGATTTGCACGTCAGGACCGCTACGGACCTCCACC50530.12355474810407158No Hit
GCCCCATTGGCTCCTCAGCCAAGCACATACACCAAATGTCTGAACCTGCG47620.11643928566625547No Hit
CCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCCAAAGGTCAGAA46170.11289378032782475No Hit
CCGGGGCTCCCGCCGGCTTCTCCGGGATCGGTTGCGTTACCGCACTGGAC44690.10927491970652997No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)