FastQCFastQC Report
Thu 19 Jan 2023
EGAF00007815874

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007815874
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28613
Sequences flagged as poor quality0
Sequence length151
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCATACGAGCATCAGCAGCATACGAGCATCAGCAGCATACGAGCATCAGC6392.2332506203473943No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGATACGTTCTTCGTGTA6262.1878167266627058No Hit
CATCAGCAGCATACGAGCATCAGCAGCATACGAGCATCAGCAGCATACGA2570.898193128997309No Hit
GCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2400.8387795757173313No Hit
AGCATCAGCAGCATACGAGCATCAGCAGCATACGAGCATCAGCAGCATAC1980.6919931499667983No Hit
GCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGATACGTTCTTC1800.6290846817879985No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1510.5277321497221542No Hit
GCAGCATACGAGCATCAGCAGCATACGAGCATCAGCAGCATACGAGCATC1020.3564813196798658No Hit
GCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT880.30755251109635484No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG800.2795931919057771No Hit
AGCATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT790.2760982770069549No Hit
CAATCTGTCTCTTATACACATCTGACGCTGCCGACGATACGTTCTTCGTG780.2726033621081327No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGC740.25862370251284383No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG730.25512878761402163No Hit
GTGTATAAGAGACAGATTGCGCAATCTGTCTCTTATACACATCTGACGCT700.24464404291755495No Hit
ATACGAGCATCAGCAGCATACGAGCATCAGCAGCATACGAGCATCAGCAG670.23415929822108833No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGCA600.20969489392933283No Hit
GCATTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGATACGT540.18872540453639955No Hit
CAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT540.18872540453639955No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCC510.1782406598399329No Hit
CAGCATACGAGCATCAGCAGCATACGAGCATCAGCAGCATACGAGCATCA500.1747457449411107No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGC470.16426100024464405No Hit
CGAGCATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTT470.16426100024464405No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCC470.16426100024464405No Hit
CTGTCTCTTATACACATCTGACGCTGCCGACGATACGTTCTTCGTGTAGA450.15727117044699962No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCC450.15727117044699962No Hit
CAGCAGCATACGAGCATCAGCAGCATACGAGCATCAGCAGCATACGAGCA440.15377625554817742No Hit
GCATACGAGCATCAGCAGCATACGAGCATCAGCAGCATACGATTTTTTTT420.14678642575053297No Hit
TCATTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGATACGT420.14678642575053297No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACC420.14678642575053297No Hit
GCATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT410.14329151085171074No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGG400.13979659595288854No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGC400.13979659595288854No Hit
TTTTTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGATACGT400.13979659595288854No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGC390.13630168105406634No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCG380.13280676615524412No Hit
CGAGCATCATTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACG380.13280676615524412No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGC370.12931185125642192No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCC350.12232202145877748No Hit
GTATAAGAGACAGATTGCGCAATCTGTCTCTTATACACATCTGACGCTGC350.12232202145877748No Hit
AGCATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG350.12232202145877748No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCA340.11882710655995525No Hit
CACGAGCATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTT330.11533219166113305No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAC320.11183727676231084No Hit
CGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT310.10834236186348861No Hit
CCACGAGCATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTT290.1013525320658442No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)