FastQCFastQC Report
Wed 18 Jan 2023
EGAF00007815920

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007815920
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18209
Sequences flagged as poor quality0
Sequence length151
%GC48

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCATACGAGCATCAGCAGCATACGAGCATCAGCAGCATACGAGCATCAGC4892.6854851996265583No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGAACTACCGAGGGTGTA3021.658520511834807No Hit
CATCAGCAGCATACGAGCATCAGCAGCATACGAGCATCAGCAGCATACGA2241.2301609094403867No Hit
GCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1921.0544236366631885No Hit
AGCATCAGCAGCATACGAGCATCAGCAGCATACGAGCATCAGCAGCATAC1710.9390960514031522No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1370.7523751990773794No Hit
GCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGAACTACCGAGG1240.6809819320116426No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGAACTACCGAGGGTGGA1090.598605085397331No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGAACTACCGAGGGTGTT950.5217200285573068No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGAACTACCGAGGGTGGT900.49426107968586963No Hit
GCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT840.461310341040145No Hit
AGCATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT770.42286781262013295No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG660.36245812510297104No Hit
GCAGCATACGAGCATCAGCAGCATACGAGCATCAGCAGCATACGAGCATC630.34598275578010873No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGC560.3075402273600967No Hit
ATACGAGCATCAGCAGCATACGAGCATCAGCAGCATACGAGCATCAGCAG560.3075402273600967No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG560.3075402273600967No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCC530.29106485803723436No Hit
CAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT520.28557306826294687No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCC520.28557306826294687No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCG440.24163875006864738No Hit
CGAGCATCATTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACG430.23614696029435994No Hit
CCACGAGCATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTT430.23614696029435994No Hit
CAATCTGTCTCTTATACACATCTGACGCTGCCGACGAACTACCGAGGGTG420.2306551705200725No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCC410.22516338074578504No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGCA400.21967159097149763No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGC380.20868801142292273No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACC380.20868801142292273No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAC380.20868801142292273No Hit
TCATTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGAACTAC370.20319622164863527No Hit
TTTTTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGAACTAC370.20319622164863527No Hit
GCATTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGAACTAC370.20319622164863527No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCC340.18672085232577296No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGC340.18672085232577296No Hit
GTGTATAAGAGACAGATTGCGCAATCTGTCTCTTATACACATCTGACGCT310.17024548300291065No Hit
ACGAGCATCATTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGAC300.1647536932286232No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGG300.1647536932286232No Hit
CGAGCATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTT290.15926190345433577No Hit
CACGAGCATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTT270.1482783239057609No Hit
CAGCATACGAGCATCAGCAGCATACGAGCATCAGCAGCATACGAGCATCA250.137294744357186No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGC230.12631116480861113No Hit
CAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGCAA220.12081937503432369No Hit
CAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGCAAT220.12081937503432369No Hit
GCATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT210.11532758526003625No Hit
GCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGCAATAT210.11532758526003625No Hit
GCATACGAGCATCAGCAGCATACGAGCATCAGCAGCATACGATTTTTTTT210.11532758526003625No Hit
GCATACGAGCATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTT210.11532758526003625No Hit
CCATTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGAACTAC200.10983579548574882No Hit
AGCATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG200.10983579548574882No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCG200.10983579548574882No Hit
CGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT200.10983579548574882No Hit
CAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGCAA190.10434400571146137No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCC190.10434400571146137No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA190.10434400571146137No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)