FastQCFastQC Report
Thu 19 Jan 2023
EGAF00007815922

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007815922
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28307
Sequences flagged as poor quality0
Sequence length151
%GC48

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCATACGAGCATCAGCAGCATACGAGCATCAGCAGCATACGAGCATCAGC11564.083795527608012No Hit
CATCAGCAGCATACGAGCATCAGCAGCATACGAGCATCAGCAGCATACGA4661.6462359133783164No Hit
AGCATCAGCAGCATACGAGCATCAGCAGCATACGAGCATCAGCAGCATAC4471.5791147066096725No Hit
GCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3701.3070971844420107No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGAACTACCGAGGGTGTA3441.2152471120217614No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2040.7206697989896492No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGAACTACCGAGGGTGGA1730.6111562511039672No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGAACTACCGAGGGTGTT1620.5722966050800156No Hit
ATACGAGCATCAGCAGCATACGAGCATCAGCAGCATACGAGCATCAGCAG1390.49104461793902565No Hit
GCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGAACTACCGAGG1360.4804465326597661No Hit
GCAGCATACGAGCATCAGCAGCATACGAGCATCAGCAGCATACGAGCATC1250.44158688663581447No Hit
AGCATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1140.40272724061186277No Hit
GCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1120.3956618504256898No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGAACTACCGAGGGTGGT1060.37446567986717066No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG970.342671424029392No Hit
CAATCTGTCTCTTATACACATCTGACGCTGCCGACGAACTACCGAGGGTG790.27908291235383476No Hit
CAGCAGCATACGAGCATCAGCAGCATACGAGCATCAGCAGCATACGAGCA760.26848482707457516No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGC740.2614194368884022No Hit
CAGCATACGAGCATCAGCAGCATACGAGCATCAGCAGCATACGAGCATCA730.2578867417953156No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG700.24728865651605608No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGCA650.22962518105062352No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACC620.21902709577136395No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCC620.21902709577136395No Hit
GCATACGAGCATCAGCAGCATACGAGCATCAGCAGCATACGATTTTTTTT600.21196170558519092No Hit
CAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT600.21196170558519092No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCC570.20136362030593138No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCG540.19076553502667185No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGC510.1801674497474123No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGC480.16956936446815277No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCC450.1589712791888932No Hit
GTGTATAAGAGACAGATTGCGCAATCTGTCTCTTATACACATCTGACGCT440.1554385840958067No Hit
TCATTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGAACTAC430.15190588900272017No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGG420.14837319390963366No Hit
AGCATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG410.14484049881654715No Hit
GCATACGAGCATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTT400.14130780372346063No Hit
CGAGCATCATTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACG400.14130780372346063No Hit
CCACGAGCATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTT400.14130780372346063No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGC390.1377751086303741No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCC380.13424241353728758No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGC380.13424241353728758No Hit
GCATTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGAACTAC360.12717702335111458No Hit
GCAGCATACATTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGAC360.12717702335111458No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCC350.12364432825802804No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGCAA340.12011163316494153No Hit
TTTTTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGAACTAC340.12011163316494153No Hit
CGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT340.12011163316494153No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGCA320.1130462429787685No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCA310.10951354788568197No Hit
CAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGCAAT310.10951354788568197No Hit
TACGAGCATCAGCAGCATACGAGCATCAGCAGCATACGAGCATCAGCAGC300.10598085279259546No Hit
CGAGCATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTT300.10598085279259546No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCCC300.10598085279259546No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)