FastQCFastQC Report
Thu 19 Jan 2023
EGAF00007815970

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007815970
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences262884
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT6750.25676724334687545No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGACCAACATCATGGGGG3690.14036609302962522No Hit
GGATCACTTGGCCCTTTCTCTTCTTATCTCCTCCCAGTTCAAAATGCTTG3160.12020510947794465No Hit
GAGCTGTTCCTCTTTGGACTAACAGTTAAATTTACAAGGGGATTTAGAGG3140.11944431764580575No Hit
TCTATAGGGTGATAGATTGGTCCAATTGGGTGTGAGGAGTTCAGTTATAT2700.10270689733875019No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)