FastQCFastQC Report
Thu 19 Jan 2023
EGAF00007815989

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007815989
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences115312
Sequences flagged as poor quality0
Sequence length151
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCTGTCTCTTATACACATCTCCGAGCCCACGAGACTGAGGTTGTAATCT3640.3156653253781046No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG3240.2809768280838074No Hit
ATTGCGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2780.24108505619536563No Hit
ATATAGTACCGCAAGGGAAAGATGAAAAATTATAACCAAGCATAATATAG2040.1769113362009158No Hit
GCATAATATAGCAAGGACTAACCCCTATACCTTCTGCATAATGAATTAAC1780.1543638129596226No Hit
ATTGCGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCGTATGCTGCTG1730.15002775079783545No Hit
TTATTACCCTCACTGTCAACCCAACACAGGCATGCTCATAAGGAAAGGTT1690.14655890106840572No Hit
AGATATAGTACCGCAAGGGAAAGATGAAAAATTATAACCAAGCATAATAT1450.1257458026918274No Hit
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCCGCGGTAC1430.12401137782711252No Hit
ATCTGTCTCTTATACACATCTCCGAGCCCACGAGACTGAGGTTGTAATCG1400.12140974053004024No Hit
ACCTTAGCCAAACCATTTACCCAAATAAAGTATAGGCGATAGAAATTGAA1390.12054252809768282No Hit
ATTGCGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACTGAGGTTGT1380.11967531566532538No Hit
TCTATAGGGTGATAGATTGGTCCAATTGGGTGTGAGGAGTTCAGTTATAT1300.11273761620646594No Hit
ATTGCGCAATGACACTGATGGGGAAAAAGTCATGGAGGCCATGGGGTTGG1200.10406549188289164No Hit
GGCTTATGCGGAGGAGAATGTTTTCATGTTACTTATACTAACATTAGTTC1170.10146385458581934No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)