FastQCFastQC Report
Thu 19 Jan 2023
EGAF00007816074

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007816074
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31557
Sequences flagged as poor quality0
Sequence length151
%GC49

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCATACGAGCATCAGCAGCATACGAGCATCAGCAGCATACGAGCATCAGC4211.3340938619006877No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGATGGAGATAACGTGGG4091.296067433532972No Hit
GCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3391.0742466013879646No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGATGGAGATAACGTGGT2790.8841144595493868No Hit
GCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGATGGAGATAAC2130.6749691035269513No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1790.5672275564850905No Hit
CATCAGCAGCATACGAGCATCAGCAGCATACGAGCATCAGCAGCATACGA1600.5070190449028742No Hit
GCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1360.4309661881674431No Hit
AGCATCAGCAGCATACGAGCATCAGCAGCATACGAGCATCAGCAGCATAC1260.3992774978610134No Hit
AGCATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1130.3580822004626549No Hit
CAATCTGTCTCTTATACACATCTGACGCTGCCGACGATGGAGATAACGTG790.2503406534207941No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG750.23766517729822226No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG720.22815857020629338No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGC700.22182083214500747No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCC700.22182083214500747No Hit
GCATTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGATGGAG630.1996387489305067No Hit
CAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT630.1996387489305067No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGCA600.19013214183857782No Hit
TTTTTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGATGGAG590.18696327280793484No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGC550.174287796685363No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCC550.174287796685363No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACC550.174287796685363No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAC500.15844345153214817No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGC450.14259910637893336No Hit
TCATTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGATGGAG450.14259910637893336No Hit
GCAGCATACGAGCATCAGCAGCATACGAGCATCAGCAGCATACGAGCATC430.13626136831764743No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCC430.13626136831764743No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGG420.13309249928700448No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCG420.13309249928700448No Hit
CGAGCATCATTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACG420.13309249928700448No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGATGGAGATAACGTGTA420.13309249928700448No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGC420.13309249928700448No Hit
ATACGAGCATCAGCAGCATACGAGCATCAGCAGCATACGAGCATCAGCAG400.12675476122571855No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCC400.12675476122571855No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGATGGAGATAACGTGTT400.12675476122571855No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCG390.12358589219507558No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA390.12358589219507558No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGCA390.12358589219507558No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCC380.12041702316443262No Hit
CCATTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGATGGAG380.12041702316443262No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGC380.12041702316443262No Hit
GTGTATAAGAGACAGATTGCGCAATCTGTCTCTTATACACATCTGACGCT380.12041702316443262No Hit
CGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT380.12041702316443262No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGCAA370.11724815413378965No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGATGGAGATAACGTGTG370.11724815413378965No Hit
CCACGAGCATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTT370.11724815413378965No Hit
AGCATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG360.11407928510314669No Hit
CAGCATACGAGCATCAGCAGCATACGAGCATCAGCAGCATACGAGCATCA350.11091041607250374No Hit
CAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGCAA350.11091041607250374No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCCC330.1045726780112178No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCA330.1045726780112178No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCC320.10140380898057484No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGATGGAGATAACGTGGA320.10140380898057484No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)