FastQCFastQC Report
Thu 19 Jan 2023
EGAF00007816084

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007816084
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1143822
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTTGGGCTGACTCAGGACGGTCAGTTTGGTCCCTCCGCCGAAGACCGC24120.21087197133819774No Hit
CCTATGACCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACA18330.16025220707417762No Hit
CCTATGAACATTCTGTAGGGGCCACTGTCTTCTCCACGGTGCTCCCTTCA17730.1550066356478543No Hit
GTAATATATAGCCGTGTCCTCAGGTCTCAGGCTGTTCATTTGAAGATATA14860.12991531899194103No Hit
CTTCATGCGTGACCTGGCAGCTGTAGCTTCTGTGGGACTTCCACTGCTCA14610.12772966423097298No Hit
CCTCAGAGGAGGGCGGGAACAGAGTGACCGAGGGGGCAGTCTTGGGCTGA13610.11898704518710078No Hit
GTGTGGTGGTCTCCACTCCCGCCTTGACGGGGCTGCTATCTGCCTTCCAG13010.11374147376077745No Hit
GTCTTCTCCACGGTGCTCCCTTCATGCGTGACCTGGCAGCTGTAGCTTCT12840.11225522852331918No Hit
ATATATTACTGTGCCAAAGATGAGGAGTACTATGGTTCGAAACCACTATA12140.10613539519260864No Hit
GTTTGGAGGGTGTGGTGGTCTCCACTCCCGCCTTGACGGGGCTGCTATCT11760.1028131999559372No Hit
GTGCAGGGAGAAGGGCTTGATGCCTTGGGGTGGGAGGAGAGACCCCTCCC11530.10080239757584658No Hit
GGTTTATTGAGTGCAGGGAGAAGGGCTTGATGCCTTGGGGTGGGAGGAGA11490.10045269281409169No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)