FastQCFastQC Report
Thu 19 Jan 2023
EGAF00007816146

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007816146
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51731
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCTGTCTCTTATACACATCTGACGCTGCCGACGATGGCGAATGGGTGTA5130.9916684386538052No Hit
GCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3520.6804430612205448No Hit
GCATACGAGCATCAGCAGCATACGAGCATCAGCAGCATACGAGCATCAGC2660.5141984496723434No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1400.2706307629854439No Hit
CATCAGCAGCATACGAGCATCAGCAGCATACGAGCATCAGCAGCATACGA1340.2590323017146392No Hit
GCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGATGGCGAATGG1250.24163460980843207No Hit
GCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1110.2145715335098877No Hit
AGCATCAGCAGCATACGAGCATCAGCAGCATACGAGCATCAGCAGCATAC1080.20877230287448534No Hit
CAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT570.11018538207264503No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)