FastQCFastQC Report
Thu 19 Jan 2023
EGAF00007816169

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007816169
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences301994
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCTGTCTCTTATACACATCTCCGAGCCCACGAGACTGTGGTGCTAATCT5800.19205679583038074No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG3530.11688973953124897No Hit
ATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATACTTGAG3330.11026709139916686No Hit
ATTGCGCAATGTATGCTGCTGATGCTCGCCGACCGTTGACTATTCTCTAC3180.1053001053001053No Hit
ATCTGTCTCTTATACACATCTCCGAGCCCACGAGACTGTGGTGCTAATCG3150.10430670808029298No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)