FastQCFastQC Report
Thu 19 Jan 2023
EGAF00007816296

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007816296
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39465
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCTGTCTCTTATACACATCTGACGCTGCCGACGATTCTGTTACGGTGTA7671.9434942353984543No Hit
GCATACGAGCATCAGCAGCATACGAGCATCAGCAGCATACGAGCATCAGC5661.434182186747751No Hit
GCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3240.8209806157354618No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2120.5371848473330799No Hit
CATCAGCAGCATACGAGCATCAGCAGCATACGAGCATCAGCAGCATACGA1900.4814392499683263No Hit
AGCATCAGCAGCATACGAGCATCAGCAGCATACGAGCATCAGCAGCATAC1850.4687697960217915No Hit
GCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGATTCTGTTACG1750.44343088812872167No Hit
GCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1260.31927023945267957No Hit
GTATCAGCCTGTTATCCCCAGAGTACCTTTTATCCGTTGAGCGATGGCCC970.24578740656277714No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGC900.22805017103762829No Hit
CAATCTGTCTCTTATACACATCTGACGCTGCCGACGATTCTGTTACGGTG890.2255162802483213No Hit
GCCATACCCTTGGGACCGGCTACAGCCCCAGGATGAGATGAGCCGACATC830.21031293551247943No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG800.20271126314455848No Hit
AGCATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT780.1976434815659445No Hit
CAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT740.18750791840871658No Hit
CTTCAGGGGGCTCAAGGCCCCGGCAGATCTCATCTTGAAACGAGTTTCCC730.18497402761940962No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGC670.16977068288356773No Hit
GTGTATAAGAGACAGATTGCGCAATCTGTCTCTTATACACATCTGACGCT650.16470290130495374No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGCA630.15963511972633979No Hit
GCAGCATACGAGCATCAGCAGCATACGAGCATCAGCAGCATACGAGCATC620.15710122893703282No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG590.14949955656911187No Hit
CACCAGAGGTGTGTCCACTCCGGTCCTCTCGTACTAGGAGCAGGCTTCCT580.14696566577980488No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGC570.14443177499049792No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACC550.13936399341188394No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCC530.13429621183326998No Hit
CTTCCACACTTAGCTACTCGGCAATGCCACTGGCGTGACAACCGATACAC520.13176232104396302No Hit
ATCCTACACAGATCTGTTCAAAGTCCAATACAAAGCTACAGTAAAGGTTC500.12669453946534903No Hit
ACTATGTCCTGCTTTCGCATCTGCTCGACTTGTCAGTCTCGCAGTTAAGC490.12416064867604207No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGC490.12416064867604207No Hit
CCCTTGGGACCGGCTACAGCCCCAGGATGAGATGAGCCGACATCGAGGTG480.12162675788673508No Hit
ACCATGCACTGTCCCCGATCCAGATAATGGACCTAGGTTAGAACCTCAAA470.11909286709742811No Hit
GTCTTGAACGACTCTTCAGGGGGCTCAAGGCCCCGGCAGATCTCATCTTG470.11909286709742811No Hit
ATACGAGCATCAGCAGCATACGAGCATCAGCAGCATACGAGCATCAGCAG460.11655897630812112No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCG430.10895730394020017No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGCAA430.10895730394020017No Hit
CGGTATATGTGCACCGGATTTGCCTAATGCACGCCTACTTCCATCTAAAC420.10642341315089321No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGG420.10642341315089321No Hit
TCATTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGATTCTG420.10642341315089321No Hit
CCTATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTG420.10642341315089321No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCC420.10642341315089321No Hit
CTTCCATACAGAACCACCGGATCACTATGTCCTGCTTTCGCATCTGCTCG410.10388952236158622No Hit
GTCCACTCCGGTCCTCTCGTACTAGGAGCAGGCTTCCTCAAATCTGCAGC410.10388952236158622No Hit
CCTATCAACGTCCTGGTCTTGAACGACTCTTCAGGGGGCTCAAGGCCCCG410.10388952236158622No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCC400.10135563157227924No Hit
GTTTTAAACCCAGCTCACGTACCTCTTTAAATGGCGAACAGCCATACCCT400.10135563157227924No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCC400.10135563157227924No Hit
CGAGCATCATTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACG400.10135563157227924No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)