FastQCFastQC Report
Thu 19 Jan 2023
EGAF00007816354

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007816354
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66398
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCATACGAGCATCAGCAGCATACGAGCATCAGCAGCATACGAGCATCAGC5950.8961113286544775No Hit
GCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3220.4849543660953643No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGACAAGAGAACGGTGGG3020.4548329768968945No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGACAAGAGAACGGTGGT2740.41266303201903676No Hit
CATCAGCAGCATACGAGCATCAGCAGCATACGAGCATCAGCAGCATACGA2070.3117563782041628No Hit
AGCATCAGCAGCATACGAGCATCAGCAGCATACGAGCATCAGCAGCATAC2040.3072381698243923No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1600.24097111358775866No Hit
GCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGACAAGAGAACG1330.2003072381698244No Hit
GCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT960.14458266815265522No Hit
GCAGCATACGAGCATCAGCAGCATACGAGCATCAGCAGCATACGAGCATC810.12199162625380283No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG760.11446127895418537No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGC700.10542486219464442No Hit
AGCATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT670.10090665381487395No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)