FastQCFastQC Report
Thu 19 Jan 2023
EGAF00007816356

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007816356
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62521
Sequences flagged as poor quality0
Sequence length151
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2980.4766398490107324No Hit
GCATACGAGCATCAGCAGCATACGAGCATCAGCAGCATACGAGCATCAGC2750.43985220965755506No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGACAAGAGAACGGTGGG2500.39986564514323186No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGACAAGAGAACGGTGGT2470.3950672574015131No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1710.2735081012779706No Hit
AGCATCAGCAGCATACGAGCATCAGCAGCATACGAGCATCAGCAGCATAC1230.1967338974104701No Hit
GCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGACAAGAGAACG1150.18393819676588666No Hit
GCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT990.15834679547671984No Hit
CATCAGCAGCATACGAGCATCAGCAGCATACGAGCATCAGCAGCATACGA980.1567473328961469No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG740.11836023096239665No Hit
CAATCTGTCTCTTATACACATCTGACGCTGCCGACGACAAGAGAACGGTG700.11196238064010491No Hit
GTGTATAAGAGACAGATTGCGCAATCTGTCTCTTATACACATCTGACGCT660.10556453031781321No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)