FastQCFastQC Report
Thu 19 Jan 2023
EGAF00007816465

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007816465
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences86354
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCTGTCTCTTATACACATCTCCGAGCCCACGAGACTGTAAGTCACATCT2250.26055538828542973No Hit
ATTGCGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCGTATGCTGCTG1720.19918011904486183No Hit
ATTGCGCAATGTATGCTGCTGATGCTCGCCGACCGTTGACTATTCTCTAC1640.1899159274613799No Hit
ATTGCGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCGTATGCTGCTGA1120.12969868216874725No Hit
ATTGCGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1050.12159251453320054No Hit
ATCTGTCTCTTATACACATCTCCGAGCCCACGAGACTGTAAGTCACATCG1030.11927646663733005No Hit
ATTGCGCAATGCTGCTGATGCTCGCCGACCGTTGACTATTCTCTACAAAC920.10653820321004238No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)