FastQCFastQC Report
Wed 18 Jan 2023
EGAF00007816478

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007816478
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17585
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCTGTCTCTTATACACATCTGACGCTGCCGACGATCCAACCGCTGTGTA4422.51350582883139No Hit
GCATACGAGCATCAGCAGCATACGAGCATCAGCAGCATACGAGCATCAGC3071.745806084731305No Hit
GCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1470.8359397213534262No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1330.7563264145578618No Hit
GCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGATCCAACCGCT1060.6027864657378448No Hit
AGCATCAGCAGCATACGAGCATCAGCAGCATACGAGCATCAGCAGCATAC940.5345464884845039No Hit
CATCAGCAGCATACGAGCATCAGCAGCATACGAGCATCAGCAGCATACGA920.5231731589422803No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGATCCAACCGCGGTGTA910.5174864941711687No Hit
CAATCTGTCTCTTATACACATCTGACGCTGCCGACGATCCAACCGCTGTG540.3070798976400341No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG530.3013932328689224No Hit
AGCATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT510.2900199033266989No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG400.2274665908444697No Hit
GCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT400.2274665908444697No Hit
TCATTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGATCCAA380.2160932613022462No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGC370.21040659653113447No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGC360.20471993176002273No Hit
GCATTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGATCCAA360.20471993176002273No Hit
CAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT340.19334660221779926No Hit
GCAGCATACGAGCATCAGCAGCATACGAGCATCAGCAGCATACGAGCATC320.18197327267557578No Hit
TTTTTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGATCCAA320.18197327267557578No Hit
GTGTATAAGAGACAGATTGCGCAATCTGTCTCTTATACACATCTGACGCT320.18197327267557578No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCC310.17628660790446402No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGG280.1592266135911288No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCG280.1592266135911288No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGCA280.1592266135911288No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGATCCAACCGCTGGGTA280.1592266135911288No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCC280.1592266135911288No Hit
CCATTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGATCCAA280.1592266135911288No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGC260.14785328404890533No Hit
ATACGAGCATCAGCAGCATACGAGCATCAGCAGCATACGAGCATCAGCAG260.14785328404890533No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGC250.1421666192777936No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCA240.13647995450668185No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCC240.13647995450668185No Hit
CAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGCAA230.13079328973557008No Hit
CAGCATACGAGCATCAGCAGCATACGAGCATCAGCAGCATACGAGCATCA230.13079328973557008No Hit
GTATAAGAGACAGATTGCGCAATCTGTCTCTTATACACATCTGACGCTGC230.13079328973557008No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACC230.13079328973557008No Hit
CTGTCTCTTATACACATCTGACGCTGCCGACGATCCAACCGCTGTGTAGA230.13079328973557008No Hit
ACGAGCATCATTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGAC210.1194199601933466No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAC200.11373329542223486No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGATCCAACCGCTGTGTT190.1080466306511231No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGCA190.1080466306511231No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGATCCAACCGCGGGGTA180.10235996588001137No Hit
AGCATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG180.10235996588001137No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)