FastQCFastQC Report
Thu 19 Jan 2023
EGAF00007816480

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007816480
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28408
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCTGTCTCTTATACACATCTGACGCTGCCGACGATCCAACCGCTGTGTA5732.0170374542382428No Hit
GCATACGAGCATCAGCAGCATACGAGCATCAGCAGCATACGAGCATCAGC3621.2742889326950155No Hit
GCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2390.8413123063925655No Hit
CATCAGCAGCATACGAGCATCAGCAGCATACGAGCATCAGCAGCATACGA1620.5702618980568854No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1430.5033793297662631No Hit
AGCATCAGCAGCATACGAGCATCAGCAGCATACGAGCATCAGCAGCATAC1410.49633905941988177No Hit
GCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGATCCAACCGCT1310.46113770768797524No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGATCCAACCGCGGTGTA1240.43649676147564065No Hit
GCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT830.292171219374824No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG720.25344973246972685No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG720.25344973246972685No Hit
AGCATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT690.2428893269501549No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGC670.2358490566037736No Hit
CAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT510.17952689383272316No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGG480.16896648831315123No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCC480.16896648831315123No Hit
CAATCTGTCTCTTATACACATCTGACGCTGCCGACGATCCAACCGCTGTG480.16896648831315123No Hit
GCATTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGATCCAA470.16544635313996056No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGC460.16192621796676993No Hit
CGAGCATCATTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACG450.1584060827935793No Hit
TTTTTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGATCCAA440.15488594762038863No Hit
GTGTATAAGAGACAGATTGCGCAATCTGTCTCTTATACACATCTGACGCT420.14784567727400733No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCC420.14784567727400733No Hit
ATACGAGCATCAGCAGCATACGAGCATCAGCAGCATACGAGCATCAGCAG410.14432554210081666No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCG400.14080540692762603No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACC400.14080540692762603No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGCA390.13728527175443536No Hit
TCATTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGATCCAA390.13728527175443536No Hit
GCAGCATACGAGCATCAGCAGCATACGAGCATCAGCAGCATACGAGCATC380.13376513658124473No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCC380.13376513658124473No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGC360.12672486623486343No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGC360.12672486623486343No Hit
CAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGCAAT360.12672486623486343No Hit
CTGTCTCTTATACACATCTGACGCTGCCGACGATCCAACCGCTGTGTAGA360.12672486623486343No Hit
ACATTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGATCCAA340.11968459588848211No Hit
CAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGCAA320.11264432554210081No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGATCCAACCGCTGGGTA320.11264432554210081No Hit
CCATTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGATCCAA310.10912419036891016No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCC300.10560405519571951No Hit
ACGAGCATCATTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGAC300.10560405519571951No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)